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* fix(clv2): align Python _update_registry schema with shell counterpart The Python `_update_registry` in instinct-cli.py wrote registry entries without the `id` and `created_at` fields, while the shell counterpart in detect-project.sh writes both. A projects.json entry could therefore have a different shape depending on which path (Python CLI or shell hook) last touched it. Emit the same field set and order as the shell version: id, name, root, remote, created_at (preserved from any existing entry), last_seen. Add regression tests asserting field parity and created_at preservation. Fixes #2299 * fix(clv2): guard _update_registry against a non-dict registry entry A malformed projects.json (a non-dict value for the current project id, e.g. null) would make existing.get("created_at", ...) raise and crash the update, losing the old code's ability to self-heal a corrupt per-entry value. Normalize existing to {} when it is not a dict so the entry is healed by the rewrite. Add a regression test for the malformed-entry path. * test(clv2): assert the first-write created_at == last_seen contract The new _update_registry tests only checked both timestamps were truthy. On the initial write both derive from the same `now`, so created_at must equal last_seen; assert that explicitly so a later refactor that breaks the contract is caught. Split the compound assertions into single-expression checks. * fix(clv2): heal a non-dict top-level registry in _update_registry A projects.json that is valid JSON but not a mapping (e.g. `[]` or a string) previously crashed _update_registry on registry.get(), before the per-entry guard could run, so the corrupt file could not be healed. Guard the top-level shape right after the load and fall back to {} so the rewrite repairs the file — matching the per-entry healing already in place. Resolves the remaining CodeRabbit finding on #2299. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com> --------- Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>