fix(agents): honor tools overrides via permission migration

src/agents/utils.test.ts

@@ -523,3 +523,49 @@ describe("override.category expansion in createBuiltinAgents", () => {
     expect(agents.oracle.model).toBe(agentsWithoutOverride.oracle.model)
   })
 })
+
+describe("agent override tools migration", () => {
+  test("tools: { x: false } is migrated to permission: { x: deny }", async () => {
+    // #given
+    const overrides = {
+      explore: { tools: { "jetbrains_*": false } } as any,
+    }
+
+    // #when
+    const agents = await createBuiltinAgents([], overrides, undefined, TEST_DEFAULT_MODEL)
+
+    // #then
+    expect(agents.explore).toBeDefined()
+    const permission = agents.explore.permission as Record<string, string>
+    expect(permission["jetbrains_*"]).toBe("deny")
+  })
+
+  test("tools: { x: true } is migrated to permission: { x: allow }", async () => {
+    // #given
+    const overrides = {
+      librarian: { tools: { "jetbrains_get_*": true } } as any,
+    }
+
+    // #when
+    const agents = await createBuiltinAgents([], overrides, undefined, TEST_DEFAULT_MODEL)
+
+    // #then
+    expect(agents.librarian).toBeDefined()
+    const permission = agents.librarian.permission as Record<string, string>
+    expect(permission["jetbrains_get_*"]).toBe("allow")
+  })
+
+  test("tools config is removed after migration", async () => {
+    // #given
+    const overrides = {
+      explore: { tools: { "some_tool": false } } as any,
+    }
+
+    // #when
+    const agents = await createBuiltinAgents([], overrides, undefined, TEST_DEFAULT_MODEL)
+
+    // #then
+    expect(agents.explore).toBeDefined()
+    expect((agents.explore as any).tools).toBeUndefined()
+  })
+})

src/agents/utils.ts

@@ -10,7 +10,7 @@ import { createMetisAgent } from "./metis"
 import { createAtlasAgent } from "./atlas"
 import { createMomusAgent } from "./momus"
 import type { AvailableAgent, AvailableCategory, AvailableSkill } from "./dynamic-agent-prompt-builder"
-import { deepMerge, fetchAvailableModels, resolveModelWithFallback, AGENT_MODEL_REQUIREMENTS, findCaseInsensitive, includesCaseInsensitive, readConnectedProvidersCache } from "../shared"
+import { deepMerge, fetchAvailableModels, resolveModelWithFallback, AGENT_MODEL_REQUIREMENTS, findCaseInsensitive, includesCaseInsensitive, readConnectedProvidersCache, migrateAgentConfig } from "../shared"
 import { DEFAULT_CATEGORIES, CATEGORY_DESCRIPTIONS } from "../tools/delegate-task/constants"
 import { resolveMultipleSkills } from "../features/opencode-skill-loader/skill-content"
 import { createBuiltinSkills } from "../features/builtin-skills"
@@ -151,7 +151,8 @@ function mergeAgentConfig(
   base: AgentConfig,
   override: AgentOverrideConfig
 ): AgentConfig {
-  const { prompt_append, ...rest } = override
+  const migratedOverride = migrateAgentConfig(override as Record<string, unknown>) as AgentOverrideConfig
+  const { prompt_append, ...rest } = migratedOverride
   const merged = deepMerge(base, rest as Partial<AgentConfig>)
 
   if (prompt_append && merged.prompt) {