fix: address Cubic CLI and agent issues — URL encode, JSONC leading comments, config clone, untracked files, parse error handling, cache path, message-dir dedup

src/cli/doctor/checks/model-resolution-details.ts

@@ -1,3 +1,6 @@
+import { join } from "node:path"
+
+import { getOpenCodeCacheDir } from "../../../shared"
 import type { AvailableModelsInfo, ModelResolutionInfo, OmoConfig } from "./model-resolution-types"
 import { formatModelWithVariant, getCategoryEffectiveVariant, getEffectiveVariant } from "./model-resolution-variant"
 
@@ -7,6 +10,7 @@ export function buildModelResolutionDetails(options: {
   config: OmoConfig
 }): string[] {
   const details: string[] = []
+  const cacheFile = join(getOpenCodeCacheDir(), "models.json")
 
   details.push("═══ Available Models (from cache) ═══")
   details.push("")
@@ -16,7 +20,7 @@ export function buildModelResolutionDetails(options: {
       `  Sample: ${options.available.providers.slice(0, 6).join(", ")}${options.available.providers.length > 6 ? "..." : ""}`
     )
     details.push(`  Total models: ${options.available.modelCount}`)
-    details.push(`  Cache: ~/.cache/opencode/models.json`)
+    details.push(`  Cache: ${cacheFile}`)
     details.push(`  ℹ Runtime: only connected providers used`)
     details.push(`  Refresh: opencode models --refresh`)
   } else {

src/features/background-agent/message-dir.ts

@@ -1,18 +1 @@
-import { existsSync, readdirSync } from "node:fs"
-import { join } from "node:path"
-
-import { MESSAGE_STORAGE } from "../hook-message-injector"
-
-export function getMessageDir(sessionID: string): string | null {
-  if (!existsSync(MESSAGE_STORAGE)) return null
-
-  const directPath = join(MESSAGE_STORAGE, sessionID)
-  if (existsSync(directPath)) return directPath
-
-  for (const dir of readdirSync(MESSAGE_STORAGE)) {
-    const sessionPath = join(MESSAGE_STORAGE, dir, sessionID)
-    if (existsSync(sessionPath)) return sessionPath
-  }
-
-  return null
-}
+export { getMessageDir } from "./message-storage-locator"

src/shared/git-worktree/collect-git-diff-stats.test.ts

@@ -15,7 +15,11 @@ const execFileSyncMock = mock((file: string, args: string[], _opts: { cwd?: stri
   }
 
   if (subcommand === "status") {
-    return " M file.ts\n"
+    return " M file.ts\n?? new-file.ts\n"
+  }
+
+  if (subcommand === "ls-files") {
+    return "new-file.ts\n"
   }
 
   throw new Error(`unexpected args: ${args.join(" ")}`)
@@ -38,7 +42,7 @@ describe("collectGitDiffStats", () => {
 
     //#then
     expect(execSyncMock).not.toHaveBeenCalled()
-    expect(execFileSyncMock).toHaveBeenCalledTimes(2)
+    expect(execFileSyncMock).toHaveBeenCalledTimes(3)
 
     const [firstCallFile, firstCallArgs, firstCallOpts] = execFileSyncMock.mock
       .calls[0]! as unknown as [string, string[], { cwd?: string }]
@@ -54,6 +58,13 @@ describe("collectGitDiffStats", () => {
     expect(secondCallOpts.cwd).toBe(directory)
     expect(secondCallArgs.join(" ")).not.toContain(directory)
 
+    const [thirdCallFile, thirdCallArgs, thirdCallOpts] = execFileSyncMock.mock
+      .calls[2]! as unknown as [string, string[], { cwd?: string }]
+    expect(thirdCallFile).toBe("git")
+    expect(thirdCallArgs).toEqual(["ls-files", "--others", "--exclude-standard"])
+    expect(thirdCallOpts.cwd).toBe(directory)
+    expect(thirdCallArgs.join(" ")).not.toContain(directory)
+
     expect(result).toEqual([
       {
         path: "file.ts",
@@ -61,6 +72,12 @@ describe("collectGitDiffStats", () => {
         removed: 2,
         status: "modified",
       },
+      {
+        path: "new-file.ts",
+        added: 0,
+        removed: 0,
+        status: "added",
+      },
     ])
   })
 })

src/shared/git-worktree/collect-git-diff-stats.ts

@@ -12,8 +12,6 @@ export function collectGitDiffStats(directory: string): GitFileStat[] {
       stdio: ["pipe", "pipe", "pipe"],
     }).trim()
 
-    if (!diffOutput) return []
-
     const statusOutput = execFileSync("git", ["status", "--porcelain"], {
       cwd: directory,
       encoding: "utf-8",
@@ -21,8 +19,27 @@ export function collectGitDiffStats(directory: string): GitFileStat[] {
       stdio: ["pipe", "pipe", "pipe"],
     }).trim()
 
+    const untrackedOutput = execFileSync("git", ["ls-files", "--others", "--exclude-standard"], {
+      cwd: directory,
+      encoding: "utf-8",
+      timeout: 5000,
+      stdio: ["pipe", "pipe", "pipe"],
+    }).trim()
+
+    const untrackedNumstat = untrackedOutput
+      ? untrackedOutput
+          .split("\n")
+          .filter(Boolean)
+          .map((filePath) => `0\t0\t${filePath}`)
+          .join("\n")
+      : ""
+
+    const combinedNumstat = [diffOutput, untrackedNumstat].filter(Boolean).join("\n").trim()
+
+    if (!combinedNumstat) return []
+
     const statusMap = parseGitStatusPorcelain(statusOutput)
-    return parseGitDiffNumstat(diffOutput, statusMap)
+    return parseGitDiffNumstat(combinedNumstat, statusMap)
   } catch {
     return []
   }